I Need WordPress Help – Problems With Functions.php

I’m hoping that there’s a WordPress expert out there who can help me.  As you can see my header is messed up.  Actually my whole theme is, but that’s the most visible bit.

I think the problem is that my theme has a settings section within the WordPress dashboard and none of the changes I make there are getting saved.  I believe that this settings file is created by the functions.php file, but I don’t know where it stores the changes I make, and I think the ‘storage’ location has the wrong file permissions so the changes aren’t getting applied.

Can anybody help me fix?  Thanks in advance for any help.

Update: It seems to have fixed itself as I’m sure it wasn’t me!

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